| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/mothur_remove_dists/mothur_remove_dists/1.39.5.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/mothur_remove_dists/mothur_remove_dists/1.36.1.0 |
| mothur_remove_dists |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| mothur | 1.39.5 | package |
| Additional information about this tool |
set -o pipefail; export TERM=vt100;
## create symlinks to input datasets
ln -s '$accnos' accnos.dat &&
ln -s '$input.dist' input_dist.dat &&
echo 'remove.dists(
accnos=accnos.dat,
#if $input.source == "phylip":
phylip=input_dist.dat
#else
column=input_dist.dat
#end if
)'
| sed 's/ //g' ## mothur trips over whitespace
| mothur
| tee mothur.out.log
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input|dist: 98_sq_phylip_amazon.dist input|source: phylip accnos: amazon.bad.accnos savelog: True |
name: value name: value |
98_sq_phylip_amazon.dist amazon.bad.accnos value |