| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/codeml/codeml/4.9+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/codeml/codeml/1.0 (this tool) |
| codeml |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| paml | 4.9 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
adv|RateAncestor: 1 compat_model|brmodel: 0 tree: RAxML_bestTree concat_nuc: concat.fasta compat_model|NSsites: 0 |
2ngdn: 1_2ngdn 2ngds: 1_2ngds 2ngt: 1_2ngt run: 1_run_codeml ctl: 1_codeml.ctl |
concat.fasta RAxML_bestTree 1_2ngdn 1_2ngds 1_2ngt 1_run_codeml 1_codeml.ctl |
| Test-2 |
adv|RateAncestor: 1 compat_model|brmodel: 2 tree: tree_model2 concat_nuc: concat.fasta compat_model|NSsites: 0 |
2ngdn: 2_2ngdn 2ngds: 2_2ngds 2ngt: 2_2ngt run: 2_run_codeml ctl: 2_codeml.ctl |
concat.fasta tree_model2 2_2ngdn 2_2ngds 2_2ngt 2_run_codeml 2_codeml.ctl |
| Test-3 |
adv|RateAncestor: 1 compat_model|brmodel: 3 tree: tree_model3 concat_nuc: concat.fasta compat_model|NSsites: 2 |
2ngdn: 3_2ngdn 2ngds: 3_2ngds 2ngt: 3_2ngt run: 3_run_codeml ctl: 3_codeml.ctl |
concat.fasta tree_model3 3_2ngdn 3_2ngds 3_2ngt 3_run_codeml 3_codeml.ctl |