| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/codeml/codeml/4.9+galaxy2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/codeml/codeml/4.9+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/codeml/codeml/1.0 |
| codeml |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| paml | 4.9 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
concat_nuc: concat.fasta tree: RAxML_bestTree compat_model|NSsites: 0 compat_model|brmodel: 0 adv|fix_omega: 0 adv|omega: 0.2 adv|RateAncestor: 1 |
name: value name: value name: value name: value name: value |
concat.fasta RAxML_bestTree value |
| Test-2 |
concat_nuc: concat.fasta tree: tree_model2 compat_model|NSsites: 0 compat_model|brmodel: 2 adv|fix_omega: 0 adv|omega: 0.2 adv|RateAncestor: 1 |
name: value name: value name: value name: value name: value |
concat.fasta tree_model2 value |
| Test-3 |
concat_nuc: concat.fasta tree: tree_model3 compat_model|NSsites: 2 compat_model|brmodel: 3 adv|fix_omega: 0 adv|omega: 0.2 adv|RateAncestor: 1 |
name: value name: value name: value name: value name: value |
concat.fasta tree_model3 value |