Repository revision
7:557cc16931f4

Repository 'khmer_normalize_by_median'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/khmer_normalize_by_median

khmer: Normalize By Median tool metadata
Miscellaneous
Filter reads using digital normalization via k-mer abundances
khmer_normalize_by_median
toolshed.g2.bx.psu.edu/repos/iuc/khmer_normalize_by_median/khmer_normalize_by_median/3.0.0a3+galaxy1
3.0.0a3+galaxy1
normalize-by-median.py --version 2>&1 | tail -n 1 | cut -d ' ' -f 2
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/khmer_normalize_by_median/khmer_normalize_by_median/3.0.0a3+galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/khmer_normalize_by_median/khmer_normalize_by_median/3.0.0a3+galaxy1 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/khmer_normalize_by_median/khmer_normalize_by_median/3.0.0a1.0
toolshed.g2.bx.psu.edu/repos/iuc/khmer_normalize_by_median/khmer_normalize_by_median/2.0.0
khmer_normalize_by_median
Requirements (dependencies defined in the <requirements> tag set)
name version type
khmer 3.0.0a3 package
Functional tests
name inputs outputs required files
Test-1 parameters|ksize: 17
inputs: test-abund-read-2.fa
cutoff: 1
parameters|type: specific
attributes: name
test-abund-read-2.fa
name
Test-2 parameters|ksize: 17
inputs: test-abund-read-2.fa.gz
cutoff: 2
parameters|type: specific
attributes: name
test-abund-read-2.fa.gz
name
Test-3 parameters|ksize: 17
inputs: test-abund-read-paired.fa
cutoff: 1
parameters|type: specific
attributes: name
test-abund-read-paired.fa
name