| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/preprocess_muon/preprocess_muon/0.1.6+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/preprocess_muon/preprocess_muon/0.1.6+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/preprocess_muon/preprocess_muon/0.1.6+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/preprocess_muon/preprocess_muon/0.1.6+galaxy0 (this tool) |
| preprocess_muon |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| muon | 0.1.6 | package |
| leidenalg | 0.10.2 | package |
| louvain | 0.8.2 | package |
| mofapy2 | 0.7.2 | package |
| Additional information about this tool |
cp '$mdata' 'mudata.h5mu' &&
cat '$script_file' > '$hidden_output' &&
python '$script_file' >> '$hidden_output' &&
touch 'mudata_info.txt' &&
cat 'mudata_info.txt' | sed -r '1 s|MuData object with (.+) = (.*)\s*|\1: \2|g' | sed "s|'||g" | sed -r 's|^\s*(.*):\s(.*)|[\1]\n- \2|g' | sed 's|, |\n- |g'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
mdata: pbmc3k_chr21.h5mu method|method: pp.intersect_obs advanced_common|show_log: True |
name: value name: value |
pbmc3k_chr21.h5mu value |
| Test-2 |
mdata: pbmc3k_chr21.h5mu method|n_pcs: 5 method|method: pp.l2norm advanced_common|show_log: True |
name: value name: value |
pbmc3k_chr21.h5mu value |
| Test-3 |
mdata: pbmc3k_chr21_pp.neighbors_in.h5mu method|n_neighbors: 2 method|n_bandwidth_neighbors: 3 method|n_multineighbors: 5 method|n_keys|modalities_0|mod_name: rna method|n_keys|modalities_0|neighbor_keys: neighbors method|n_keys|modalities_1|mod_name: atac method|n_keys|modalities_1|neighbor_keys: neighbors method|n_keys|type: separate method|method: pp.neighbors advanced_common|show_log: True |
name: value name: value |
pbmc3k_chr21_pp.neighbors_in.h5mu value |
| Test-4 |
mdata: pbmc3k_chr21.h5mu method|frac: 0.5 method|min_n: 10 method|method: pp.sample_obs advanced_common|show_log: True |
name: value name: value |
pbmc3k_chr21.h5mu value |