| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_readmap_and_size_histograms/Readmap/1.2.1 |
| toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_readmap_and_size_histograms/Readmap/1.2.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_readmap_and_size_histograms/Readmap/1.1.5 |
| toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_readmap_and_size_histograms/Readmap/1.1.3 |
| toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_readmap_and_size_histograms/Readmap/1.1.2 |
| toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_readmap_and_size_histograms/Readmap/1.0.5 |
| toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_readmap_and_size_histograms/Readmap/1.0.4 |
| Readmap |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bowtie | 1.0.0 | package |
| pysam | 0.9.0 | package |
| numpy | 1.9.3 | package |
| r-optparse | 1.3.0=r3.2.2_1 | package |
| r-latticeextra | 0.6_26=r3.2.2_2a | package |
| r-gridextra | 2.0.0=r3.2.2_0a | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
minquery: 20 refGenomeSource|series_1|norm: 1 refGenomeSource|series_0|input: sample1.srbowtie_out maxquery: 30 refGenomeSource|series_2|input: sample3.srbowtie_out refGenomeSource|series_0|norm: 1 refGenomeSource|series_1|input: sample2.srbowtie_out rows_per_page: 8 title: Readmaps and size distributions xlabel: Coordinates/read size ylabel: Number of reads refGenomeSource|series_2|norm: 1 refGenomeSource|genomeSource: history refGenomeSource|ownFile: transposons.fasta |
readmap_dataframe: Readmap_dataframe.tab size_distribution_dataframe: Size_distribution_dataframe.tab |
transposons.fasta sample1.srbowtie_out sample2.srbowtie_out sample3.srbowtie_out Readmap_dataframe.tab Size_distribution_dataframe.tab |