Repository revision
0:4ca0e679f21e

Repository 'dexseq'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/dexseq

DEXSeq-Count tool metadata
Miscellaneous
DEXSeq-Count
Prepare and count exon abundancies from RNA-seq data
dexseq_count
toolshed.g2.bx.psu.edu/repos/iuc/dexseq/dexseq_count/1.0
1.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/dexseq/dexseq_count/1.44+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/dexseq/dexseq_count/1.0 (this tool)
dexseq_count
Requirements (dependencies defined in the <requirements> tag set)
name version type
dexseq 1.14 package
htseq 0.6.1 package
pysam 0.7.7 package
Functional tests
name inputs outputs required files
Test-1 mode|aggregate: True
mode|gtffile: original.gtf
mode|mode_select: prepare
flattened_gtf_out: flattened.gtf
original.gtf
flattened.gtf