Repository revision
7:62adf13b86ea

Repository 'dexseq'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/dexseq

DEXSeq-Count tool metadata
Miscellaneous
DEXSeq-Count
Prepare and count exon abundancies from RNA-seq data
dexseq_count
toolshed.g2.bx.psu.edu/repos/iuc/dexseq/dexseq_count/1.28.1.0
1.28.1.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/dexseq/dexseq_count/1.28.1.0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/dexseq/dexseq_count/1.0
dexseq_count
Requirements (dependencies defined in the <requirements> tag set)
name version type
bioconductor-dexseq 1.28.1 package
Functional tests
name inputs outputs required files
Test-1 mode|gtffile: original.gtf
mode|aggregate: True
mode|mode_select: prepare
name: value
original.gtf
value
Test-2 mode|bamfile: in.bam
mode|flattened_gtf_in: flattened.gtf
mode|stranded: no
mode|mode_select: count
name: value
in.bam
flattened.gtf
value