Revision: 7:62adf13b86ea

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/dexseq

Miscellaneous

Name: plotDEXSeq

Description: Visualization of the per gene DEXSeq results

Id: plotdexseq

Guid: toolshed.g2.bx.psu.edu/repos/iuc/dexseq/plotdexseq/1.28.1.0

Version: 1.28.1.0

Version command string: echo $(R --version | grep version | grep -v GNU)", DEXSeq version" $(R --vanilla --slave -e "library(DEXSeq); cat(sessionInfo()\$otherPkgs\$DEXSeq\$Version)" 2> /dev/null | grep -v -i "WARNING: ")" (depends on DESeq2 "$(R --vanilla --slave -e "library(DESeq2); cat(sessionInfo()\$otherPkgs\$DESeq2\$Version)" 2> /dev/null | grep -v -i "WARNING: ")")"

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/dexseq/plotdexseq/@VERSION@.1

toolshed.g2.bx.psu.edu/repos/iuc/dexseq/plotdexseq/1.28.1.0 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/dexseq/plotdexseq/1.26.0.0

plotdexseq

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name	version	type
bioconductor-dexseq	1.28.1	package
r-getopt	1.20.2	package

Functional tests

name	inputs	outputs	required files
Test-1	rdata: dexseq.rds primaryfactor: condition genes|geneid: FBgn0000053 fdr_cutoff: 1	name: value	dexseq.rds value
Test-2	rdata: dexseq.rds primaryfactor: condition fdr_cutoff: 1	name: value	dexseq.rds value