Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/dexseq/plotdexseq/1.48.0+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/dexseq/plotdexseq/1.44+galaxy0 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/dexseq/plotdexseq/1.28.1.1 |
toolshed.g2.bx.psu.edu/repos/iuc/dexseq/plotdexseq/@VERSION@.1 |
toolshed.g2.bx.psu.edu/repos/iuc/dexseq/plotdexseq/1.28.1.0 |
toolshed.g2.bx.psu.edu/repos/iuc/dexseq/plotdexseq/1.26.0.0 |
plotdexseq |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
bioconductor-dexseq | 1.44 | package |
r-getopt | 1.20.3 | package |
r-rjson | 0.2.21 | package |
Additional information about this tool |
Rscript '$__tool_directory__/plotdexseq.R' -r '$rdata' -p '$primaryfactor' #if $genes.genes_select == 'list': -f '$genes.genefile' #else: -g '$genes.geneid' #end if -c $fdr_cutoff -t $transcripts -a $names -n $normcounts -s $splicing
Functional tests |
name | inputs | outputs | required files |
Test-1 |
rdata: dexseq.rds primaryfactor: condition genes|geneid: FBgn0000053 fdr_cutoff: 1 |
name: value |
dexseq.rds value |
Test-2 |
rdata: dexseq.rds primaryfactor: condition fdr_cutoff: 1 |
name: value |
dexseq.rds value |