| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/delly_lr/delly_lr/0.9.1+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/delly_lr/delly_lr/0.9.1+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/delly_lr/delly_lr/0.8.7+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/delly_lr/delly_lr/0.8.5+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/delly_lr/delly_lr/0.8.3+galaxy0 |
| delly_lr |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| delly | 0.9.1 | package |
| bcftools | 1.12 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input: normal.bam generic|genome: genome.fasta oo|out: ['vcf', 'bcf'] |
name: value name: value |
normal.bam genome.fasta value |
| Test-2 |
input: ['normal.bam', 'tumor.bam'] generic|genome: genome.fasta oo|out: ['vcf', 'bcf', 'log'] |
name: value name: value name: value |
normal.bam tumor.bam genome.fasta value |
| Test-3 |
input: normal.bam generic|genome: genome.fasta generic|exclude: exclude.tsv oo|out: ['vcf', 'bcf', 'dump', 'log'] |
name: value name: value name: value name: value |
normal.bam genome.fasta exclude.tsv value |
| Test-4 |
input: normal.bam generic|svtype: DEL generic|technology: pb generic|genome: genome.fasta discovery|mapqual: 2 discovery|minclip: 24 discovery|mincliquesize: 1 discovery|minrefsep: 24 discovery|maxreadsep: 39 consensus|maxreads: 6 consensus|flanksize: 399 consensus|flankquality: 0.91 genotyping|genoqual: 4 oo|out: ['vcf', 'bcf', 'dump', 'log'] |
name: value name: value name: value name: value |
normal.bam genome.fasta value |
| Test-5 |
input: normal.bam generic|svtype: INS generic|genome: genome.fasta oo|out: vcf |
name: value |
normal.bam genome.fasta value |
| Test-6 |
input: normal.bam generic|svtype: DUP generic|genome: genome.fasta oo|out: bcf |
name: value |
normal.bam genome.fasta value |
| Test-7 |
input: normal.bam generic|svtype: INV generic|genome: genome.fasta oo|out: dump |
name: value |
normal.bam genome.fasta value |
| Test-8 |
input: normal.bam generic|svtype: BND generic|genome: genome.fasta oo|out: log |
name: value |
normal.bam genome.fasta value |