| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/1.4.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/1.3.0+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/1.2.3+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/0.14.4+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/0.14.3+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/0.14.2+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/0.14.2+galaxy0 |
| nextclade |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| nextclade | 1.3.0 | package |
| coreutils | 8.31 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_fasta: sarscov2_1.fasta outputs: report_tsv organism: sars-cov-2 |
name: value |
sarscov2_1.fasta value |
| Test-2 |
input_fasta: sarscov2_1.fasta outputs: ['report_tsv', 'report_json', 'output_tree'] organism: sars-cov-2 |
name: value name: value name: value |
sarscov2_1.fasta value |
| Test-3 |
input_fasta: sarscov2_1.fasta outputs: report_tsv organism: sars-cov-2 adv|input_qc_config: strict_qc.json adv|advanced_options: yes |
name: value |
sarscov2_1.fasta strict_qc.json value |