| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/2.7.0+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/2.4.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/1.11.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/1.10.3+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/1.10.2+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/1.10.1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/1.9.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/1.7.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/1.5.1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/1.4.5+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/1.4.1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/1.4.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/1.3.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/1.2.3+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/0.14.4+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/0.14.3+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/0.14.2+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/0.14.2+galaxy0 |
| nextclade |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| nextclade | 2.7.0 | package |
| coreutils | 9.0 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_fasta: sarscov2_1.fasta organism: sars-cov-2 db|source: download outputs: report_tsv |
name: value |
sarscov2_1.fasta value |
| Test-2 |
input_fasta: sarscov2_1.fasta organism: sars-cov-2 db|source: download outputs: ['report_tsv', 'report_json', 'output_tree'] |
name: value name: value name: value |
sarscov2_1.fasta value |
| Test-3 |
input_fasta: sarscov2_1.fasta organism: sars-cov-2 db|source: download outputs: report_tsv adv|input_qc_config: strict_qc.json adv|advanced_options: yes |
name: value |
sarscov2_1.fasta strict_qc.json value |
| Test-4 |
input_fasta: sarscov2_1.fasta organism: sars-cov-2 db|source: download outputs: ['report_tsv', 'output_fasta'] adv|include_reference: True adv|advanced_options: yes |
name: value name: value |
sarscov2_1.fasta value |
| Test-5 |
input_fasta: mpxv.fasta.gz organism: MPXV db|source: download outputs: report_tsv |
name: value |
mpxv.fasta.gz value |