Repository revision
13:64be7ff9b97b

Repository 'nextclade'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/nextclade

Nextclade tool metadata
Miscellaneous
Nextclade
Viral genome clade assignment, mutation calling, and sequence quality checks
nextclade
toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/1.10.1+galaxy0
1.10.1+galaxy0
nextclade --version-detailed
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/1.10.2+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/1.10.1+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/1.9.0+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/1.7.0+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/1.5.1+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/1.4.5+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/1.4.1+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/1.4.0+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/1.3.0+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/1.2.3+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/0.14.4+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/0.14.3+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/0.14.2+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/0.14.2+galaxy0
nextclade
Requirements (dependencies defined in the <requirements> tag set)
name version type
nextclade 1.10.1 package
coreutils 8.31 package
Functional tests
name inputs outputs required files
Test-1 input_fasta: sarscov2_1.fasta
outputs: report_tsv
organism: sars-cov-2
name: value
sarscov2_1.fasta
value
Test-2 input_fasta: sarscov2_1.fasta
outputs: ['report_tsv', 'report_json', 'output_tree']
organism: sars-cov-2
name: value
name: value
name: value
sarscov2_1.fasta
value
Test-3 input_fasta: sarscov2_1.fasta
outputs: report_tsv
organism: sars-cov-2
adv|input_qc_config: strict_qc.json
adv|advanced_options: yes
name: value
sarscov2_1.fasta
strict_qc.json
value
Test-4 input_fasta: sarscov2_1.fasta
outputs: ['report_tsv', 'output_fasta']
organism: sars-cov-2
adv|include_reference: True
adv|advanced_options: yes
name: value
name: value
sarscov2_1.fasta
value