| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/khmer_filter_below_abundance_cutoff/khmer_filter_below_abundance_cutoff/3.0.0a3+galaxy2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/khmer_filter_below_abundance_cutoff/khmer_filter_below_abundance_cutoff/3.0.0a3+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/khmer_filter_below_abundance_cutoff/khmer_filter_below_abundance_cutoff/3.0.0a1.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/khmer_filter_below_abundance_cutoff/khmer_filter_below_abundance_cutoff/2.0.0 |
| khmer_filter_below_abundance_cutoff |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| khmer | 3.0.0a3 | package |
| screed | 1.0.1 | package |
| Additional information about this tool |
#import re
mkdir input/ &&
#set gzip=""
#for $num, $input in enumerate($inputs)
ln -s '${input}' 'input/$re.sub("[^\w\-_.]", "_", $input.element_identifier).$input.ext' &&
#if str($input).endswith(".gz"):
#set gzip="--gzip"
#end if
#end for
mkdir output &&
cd output &&
python '$__tool_directory__/filter-below-abund.py'
'${input_countgraph_filename}'
#for $num, $input in enumerate($inputs)
'../input/$re.sub("[^\w\-_.]", "_", $input.element_identifier).$input.ext'
#end for
> '$log'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
inputs: test-abund-read-2.fa input_countgraph_filename: test-abund-read-2.large.oxlicg |
test-abund-read-2.fa test-abund-read-2.large.oxlicg |