Repository revision
4:f8fa0f6718a3

Repository 'cp_export_to_spreadsheet'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/cp_export_to_spreadsheet

ExportToSpreadsheet tool metadata
Miscellaneous
export measurements into one or more files
cp_export_to_spreadsheet
toolshed.g2.bx.psu.edu/repos/bgruening/cp_export_to_spreadsheet/cp_export_to_spreadsheet/3.1.9
3.1.9
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/cp_export_to_spreadsheet/cp_export_to_spreadsheet/3.1.9+galaxy1
toolshed.g2.bx.psu.edu/repos/bgruening/cp_export_to_spreadsheet/cp_export_to_spreadsheet/3.1.9 (this tool)
cp_export_to_spreadsheet
Requirements (dependencies defined in the <requirements> tag set)
name version type
python 3.7 package
Functional tests
name inputs outputs required files
Test-1 input_pipeline: common.cppipe
delimiter: Tab
con_prefix|add_prefix: No
overwrite_existing_file: Yes
add_metadata_column_to_object: Yes
represent_nan: NaN
calc_mean: Yes
calc_median: Yes
calc_standard_deviation: Yes
con_create_gene_pattern|create_gene_pattern: No
con_export_all_measurements|export_all_measurements: Yes
name: value
common.cppipe
value
Test-2 input_pipeline: common.cppipe
delimiter: Tab
con_prefix|add_prefix: No
overwrite_existing_file: Yes
add_metadata_column_to_object: Yes
represent_nan: NaN
calc_mean: Yes
calc_median: Yes
calc_standard_deviation: Yes
con_create_gene_pattern|con_source_sample_row|metadata_category: FileName
con_create_gene_pattern|con_source_sample_row|metadata_measurement: DNA
con_create_gene_pattern|con_source_sample_row|select_source_sample_row_name: Metadata
con_create_gene_pattern|create_gene_pattern: Yes
con_export_all_measurements|export_all_measurements: Yes
name: value
common.cppipe
value
Test-3 input_pipeline: common.cppipe
delimiter: Tab
con_prefix|filename_prefix: MyExpt_
con_prefix|add_prefix: Yes
overwrite_existing_file: Yes
add_metadata_column_to_object: Yes
represent_nan: NaN
calc_mean: Yes
calc_median: Yes
calc_standard_deviation: Yes
con_create_gene_pattern|con_source_sample_row|image_filename_cat: DNA
con_create_gene_pattern|con_source_sample_row|select_source_sample_row_name: Image filename
con_create_gene_pattern|create_gene_pattern: Yes
con_export_all_measurements|r_data_to_export_0|data_to_export: Image
con_export_all_measurements|r_data_to_export_0|con_obj_name_for_filename|file_name: data.csv
con_export_all_measurements|r_data_to_export_0|con_obj_name_for_filename|use_as_filename: No
con_export_all_measurements|export_all_measurements: No
name: value
common.cppipe
value
Test-4 input_pipeline: common.cppipe
delimiter: Tab
con_prefix|filename_prefix: MyExpt_
con_prefix|add_prefix: Yes
overwrite_existing_file: Yes
add_metadata_column_to_object: Yes
represent_nan: NaN
calc_mean: Yes
calc_median: Yes
calc_standard_deviation: Yes
con_create_gene_pattern|con_source_sample_row|image_filename_cat: DNA
con_create_gene_pattern|con_source_sample_row|select_source_sample_row_name: Image filename
con_create_gene_pattern|create_gene_pattern: Yes
con_export_all_measurements|r_data_to_export_0|data_to_export: Image
con_export_all_measurements|r_data_to_export_0|con_obj_name_for_filename|file_name: data.csv
con_export_all_measurements|r_data_to_export_0|con_obj_name_for_filename|use_as_filename: No
con_export_all_measurements|r_data_to_export_1|data_to_export: Experiment
con_export_all_measurements|r_data_to_export_1|con_obj_name_for_filename|use_as_filename: Yes
con_export_all_measurements|export_all_measurements: No
name: value
common.cppipe
value