Galaxy |

Repository revision

Revision: 7:eae7c08ebb6f

Repository 'vcffilter'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/vcffilter

VCFfilter: tool metadata

Miscellaneous

Name: VCFfilter:

Description: filter VCF data in a variety of attributes

Id: vcffilter2

Guid: toolshed.g2.bx.psu.edu/repos/devteam/vcffilter/vcffilter2/1.0.0_rc1+galaxy2

Version: 1.0.0_rc1+galaxy2

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/devteam/vcffilter/vcffilter2/1.0.0_rc1+galaxy3

toolshed.g2.bx.psu.edu/repos/devteam/vcffilter/vcffilter2/1.0.0_rc1+galaxy2 (this tool)

toolshed.g2.bx.psu.edu/repos/devteam/vcffilter/vcffilter2/1.0.0_rc1+galaxy1

toolshed.g2.bx.psu.edu/repos/devteam/vcffilter/vcffilter2/1.0.0_rc1.0

toolshed.g2.bx.psu.edu/repos/devteam/vcffilter/vcffilter2/0.0.3

vcffilter2

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

vcflib

1.0.0_rc1

package

htslib

1.7

package

Functional tests

name

inputs

outputs

required files

Test-1

input1: vcflib.vcf
filter_repeat_0|filter_value: DP > 10
filter_repeat_0|filter_type: -f

attributes: name

vcflib.vcf
name