| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/gem_escher_visualization/gem_escher_visualization/0.29.1 (this tool) |
| gem_escher_visualization |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| cobra | 0.29.1 | package |
| pandas | 2.2.3 | package |
| memote | 0.17.0 | package |
| escher | 1.7.3 | package |
| Additional information about this tool |
python '$__tool_directory__/gem_escher_visualization.py'
-output '${output}'
--cb_model_location '${cb_model_location}'
#if not $flux_distribution_location == "None":
--flux_distribution_location '${flux_distribution_location}'
#end if
#if not $uptake_constraints_file == "None":
--uptake_constraints_file '${uptake_constraints_file}'
#end if
#if $map_selection.map_selection_select == "upload_map" or $map_selection.map_selection_select == "load_map":
--expect_map 'True'
#elif $map_selection.map_selection_select == "no_map":
--expect_map 'False'
#end if
#if $map_selection.map_selection_select == "upload_map":
--map_upload_name '${map_selection.map_upload_name}'
#elif $map_selection.map_selection_select == "load_map":
--map_load_name '${map_selection.map_load_name}'
#end if
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
cb_model_location: textbook_model_cobrapy.xml map_selection|map_selection_select: no_map |
name: value |
textbook_model_cobrapy.xml value |
| Test-2 |
cb_model_location: textbook_model_cobrapy.xml map_selection|map_load_name: e_coli_core.Core metabolism map_selection|map_selection_select: load_map |
name: value |
textbook_model_cobrapy.xml value |
| Test-3 |
cb_model_location: textbook_model_cobrapy.xml map_selection|map_upload_name: e_coli_core_test_map.json map_selection|map_selection_select: upload_map |
name: value |
textbook_model_cobrapy.xml e_coli_core_test_map.json value |
| Test-4 |
cb_model_location: invalid_format.txt map_selection|map_selection_select: no_map |
invalid_format.txt |