| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_postprocessing/glob_report/0.2 |
| toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_postprocessing/glob_report/0.1 (this tool) |
| glob_report |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| graphclust-wrappers | 0.2.0 | package |
| perl-array-utils | 0.5 | package |
| scikit-learn | 0.18.1 | package |
| locarna | 1.8.10 | package |
| rnaz | 2.1 | package |
| infernal | 1.1 | package |
| viennarna | 2.2.10 | package |
| graphicsmagick | 1.3.23 | package |
| rscape | 0.3.1 | package |
| unzip | 6.0 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
model_tree_files: ['1.1.model.tree.fa', '1.2.model.tree.fa'] cm_max_eval: 0.001 iteration_num|iteration_num_selector: False min_cluster_size: 3 merge_cluster_ol: 0.66 cm_min_bitscore: 20 cut_type: True results_top_num: 5 merge_overlap: 0.51 cm_bitscore_sig: 0 FASTA: FASTA.zip cmsearch_results: ['1.1.tree', '1.2.tree'] partition_type: True |
final_stats: cluster.final.stats RESULTS_zip: RESULTS.zip |
FASTA.zip 1.1.tree 1.2.tree 1.1.model.tree.fa 1.2.model.tree.fa RESULTS/cluster.final.stats RESULTS.zip |