Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicfindtads/hicexplorer_hicfindtads/3.4.2.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicfindtads/hicexplorer_hicfindtads/3.4.1.0 (this tool) |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicfindtads/hicexplorer_hicfindtads/3.3.1.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicfindtads/hicexplorer_hicfindtads/2.1.4.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicfindtads/hicexplorer_hicfindtads/2.1.2.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicfindtads/hicexplorer_hicfindtads/2.1.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicfindtads/hicexplorer_hicfindtads/2.0.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicfindtads/hicexplorer_hicfindtads/1.8.1.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicfindtads/hicexplorer_hicfindtads/1.8.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicfindtads/hicexplorer_hicfindtads/1.7.2.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicfindtads/hicexplorer_hicfindtads/1.7.1.0 |
hicexplorer_hicfindtads |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
hicexplorer | 3.4.1 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
minBoundaryDistance: 5000 precomputedZscore_conditional|step: 15000 precomputedZscore_conditional|precomputedZscore_selector: scratch precomputedZscore_conditional|maxDepth: 30000 multiple_comparison_conditional|multiple_comparison_selector: fdr multiple_comparison_conditional|threshold: 0.8 precomputedZscore_conditional|minDepth: 15000 matrix_h5_cooler: small_test_matrix.h5 |
attributes: name attributes: name attributes: name attributes: name attributes: name attributes: name |
small_test_matrix.h5 name |
Test-2 |
precomputedZscore_conditional|scoreFile: find_TADs/multiFDR_tad_score.bm minBoundaryDistance: 5000 precomputedZscore_conditional|precomputedZscore_selector: precomputed multiple_comparison_conditional|multiple_comparison_selector: fdr precomputedZscore_conditional|zscoreMatrix: find_TADs/multiFDR_zscore_matrix.h5 multiple_comparison_conditional|threshold: 0.1 matrix_h5_cooler: small_test_matrix.h5 |
attributes: name attributes: name attributes: name attributes: name |
small_test_matrix.h5 find_TADs/multiFDR_tad_score.bm find_TADs/multiFDR_zscore_matrix.h5 name |