Repository revision
2:edcf603bedfd

Repository 'tetyper'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/tetyper

TETyper tool metadata
Miscellaneous
TETyper
Transposable Element Typer
tetyper
toolshed.g2.bx.psu.edu/repos/iuc/tetyper/tetyper/1.1+galaxy1
1.1+galaxy1
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/tetyper/tetyper/1.1+galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/tetyper/tetyper/1.1+galaxy1 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/tetyper/tetyper/1.1+galaxy0
tetyper
Requirements (dependencies defined in the <requirements> tag set)
name version type
tetyper 1.1 package
Functional tests
name inputs outputs required files
Test-1 collection_paired|forward_input: ERR1911133_Tn4401b-1_mapped_subsampled_1.fastq
collection_paired|reverse_input: ERR1911133_Tn4401b-1_mapped_subsampled_2.fastq
collection_paired|selector: paired
reference: Tn4401b-1.fasta
name: value
ERR1911133_Tn4401b-1_mapped_subsampled_1.fastq
ERR1911133_Tn4401b-1_mapped_subsampled_2.fastq
Tn4401b-1.fasta
value
Test-2 collection_paired|forward_input: ERR1911133_Tn4401b-1_mapped_subsampled_1.fastq
collection_paired|reverse_input: ERR1911133_Tn4401b-1_mapped_subsampled_2.fastq
collection_paired|selector: paired
snp_profiles_source|snp_profiles: Tn4401b_snp_profiles.txt
snp_profiles_source|snp_profiles_source_selector: history
struct_profiles_source|struct_profiles: Tn4401b_struct_profiles.txt
struct_profiles_source|struct_profiles_source_selector: history
reference: Tn4401b-1.fasta
name: value
ERR1911133_Tn4401b-1_mapped_subsampled_1.fastq
ERR1911133_Tn4401b-1_mapped_subsampled_2.fastq
Tn4401b_snp_profiles.txt
Tn4401b_struct_profiles.txt
Tn4401b-1.fasta
value
Test-3 collection_paired|forward_input: ERR1911133_Tn4401b-1_mapped_subsampled_1.fastq
collection_paired|reverse_input: ERR1911133_Tn4401b-1_mapped_subsampled_2.fastq
collection_paired|selector: paired
snp_profiles_source|snp_profiles: Tn4401b_snp_profiles
snp_profiles_source|snp_profiles_source_selector: tool_data_table
struct_profiles_source|struct_profiles: Tn4401b_struct_profiles
struct_profiles_source|struct_profiles_source_selector: tool_data_table
reference: Tn4401b-1.fasta
name: value
ERR1911133_Tn4401b-1_mapped_subsampled_1.fastq
ERR1911133_Tn4401b-1_mapped_subsampled_2.fastq
Tn4401b-1.fasta
value