| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/gemini_interactions/gemini_interactions/0.20.1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/gemini_interactions/gemini_interactions/0.18.1.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/gemini_interactions/gemini_interactions/0.18.1.0 |
| gemini_interactions |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| gemini | 0.20.1 | package |
| Additional information about this tool |
#if str($interactions.source) == 'preinstalled':
#set $annotation_databases = $interactions.annotation_databases
mkdir gemini &&
ln -s '${annotation_databases.fields.path}/gemini/data' gemini/data &&
export GEMINI_CONFIG='${annotation_databases.fields.path}' &&
#end if
gemini
#set $gene = str($gene).strip()
#if $gene:
interactions -g '$gene'
#else:
## lof interactions is a separate command line tool
lof_interactions
#end if
#if str($interactions.source) == 'history':
--edges '${interactions.data}'
#end if
-r $radius
$variant_mode
'$infile'
> '$outfile'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
infile: gemini_comphets_input.db radius: 5 |
name: value |
gemini_comphets_input.db value |
| Test-2 |
infile: gemini_comphets_input.db radius: 5 variant_mode: --var |
name: value |
gemini_comphets_input.db value |