Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/gemini_interactions/gemini_interactions/0.20.1 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/gemini_interactions/gemini_interactions/0.18.1.1 |
toolshed.g2.bx.psu.edu/repos/iuc/gemini_interactions/gemini_interactions/0.18.1.0 |
gemini_interactions |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
gemini | 0.20.1 | package |
Additional information about this tool |
#if str($interactions.source) == 'preinstalled': #set $annotation_databases = $interactions.annotation_databases mkdir gemini && ln -s '${annotation_databases.fields.path}/gemini/data' gemini/data && export GEMINI_CONFIG='${annotation_databases.fields.path}' && #end if gemini #set $gene = str($gene).strip() #if $gene: interactions -g '$gene' #else: ## lof interactions is a separate command line tool lof_interactions #end if #if str($interactions.source) == 'history': --edges '${interactions.data}' #end if -r $radius $variant_mode '$infile' > '$outfile'
Functional tests |
name | inputs | outputs | required files |
Test-1 |
infile: gemini_comphets_input.db radius: 5 |
name: value |
gemini_comphets_input.db value |
Test-2 |
infile: gemini_comphets_input.db radius: 5 variant_mode: --var |
name: value |
gemini_comphets_input.db value |