Repository revision
6:b0dbddc7a288

Repository 'cami_amber_add'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/cami_amber_add

CAMI AMBER add length column tool metadata
Miscellaneous
Create gold standard file for CAMI AMBER
cami_amber_add
toolshed.g2.bx.psu.edu/repos/iuc/cami_amber_add/cami_amber_add/2.0.7+galaxy0
2.0.7+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/cami_amber_add/cami_amber_add/2.0.7+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/cami_amber_add/cami_amber_add/2.0.6+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/cami_amber_add/cami_amber_add/2.0.4+galaxy0
cami_amber_add
Requirements (dependencies defined in the <requirements> tag set)
name version type
cami-amber 2.0.7 package
Additional information about this tool
ln -s '${gold_standard_file}' '$gold_standard_file.element_identifier' &&
        ln -s '${fasta_file}' '$fasta_file.element_identifier' &&

        add_length_column.py 
        -g '$gold_standard_file.element_identifier'
        -f '$fasta_file.element_identifier'
        > gold_standard_file.tsv
    
    
None
False
Functional tests
name inputs outputs required files
Test-1 gold_standard_file: test_add.tsv
fasta_file: test_add.fasta.gz
name: value
test_add.tsv
test_add.fasta.gz
value