Repository revision
0:12d66d0d05ac

Repository 'ivar_variants'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/ivar_variants

ivar variants tool metadata
Miscellaneous
Call variants from aligned BAM file
ivar_variants
toolshed.g2.bx.psu.edu/repos/iuc/ivar_variants/ivar_variants/1.0.1+galaxy0
1.0.1+galaxy0
ivar version | grep version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/ivar_variants/ivar_variants/1.2+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/ivar_variants/ivar_variants/1.0.1+galaxy0 (this tool)
ivar_variants
Requirements (dependencies defined in the <requirements> tag set)
name version type
ivar 1.0.1 package
samtools 1.9 package
Functional tests
name inputs outputs required files
Test-1 input_bam: zika/Z52_a.masked.sorted.bam
ref: zika/db/PRV.fa
attributes: name
zika/Z52_a.masked.sorted.bam
zika/db/PRV.fa
name