| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/vardict_java/vardict_java/1.8.3+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/vardict_java/vardict_java/1.8.1+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/vardict_java/vardict_java/1.7.0+galaxy0 |
| vardict_java |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| vardict-java | 1.8.1 | package |
| gawk | 5.0.1 | package |
| samtools | 1.10 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
select_mode|normal: normal.bam select_mode|tumor: tumor.bam select_mode|mode: paired reference_source|ref_file: genome.fasta reference_source|reference_source_selector: history |
name: value name: value |
normal.bam tumor.bam genome.fasta value |
| Test-2 |
select_mode|normal: normal.bam select_mode|tumor: tumor.bam select_mode|mode: paired reference_source|ref_file: test_buildid reference_source|reference_source_selector: cached |
name: value name: value |
normal.bam tumor.bam value |
| Test-3 |
select_mode|tumor: tumor.bam select_mode|mode: single reference_source|ref_file: test_buildid reference_source|reference_source_selector: cached |
name: value name: value |
tumor.bam value |