Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/vardict_java/vardict_java/1.8.3+galaxy1 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/vardict_java/vardict_java/1.8.3+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/vardict_java/vardict_java/1.8.1+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/vardict_java/vardict_java/1.7.0+galaxy0 |
vardict_java |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
python | 3.10.2 | package |
vardict-java | 1.8.3 | package |
gawk | 5.1.0 | package |
samtools | 1.14 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
select_mode|normal: normal.bam select_mode|tumor: tumor.bam select_mode|mode: paired reference_source|ref_file: genome.fasta reference_source|reference_source_selector: history |
name: value name: value |
normal.bam tumor.bam genome.fasta value |
Test-2 |
select_mode|normal: normal.bam select_mode|tumor: tumor.bam select_mode|mode: paired reference_source|ref_file: test_buildid reference_source|reference_source_selector: cached |
name: value name: value |
normal.bam tumor.bam value |
Test-3 |
select_mode|tumor: tumor.bam select_mode|mode: single reference_source|ref_file: test_buildid reference_source|reference_source_selector: cached |
name: value name: value |
tumor.bam value |