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Repository revision

Revision: 2:12749212f61b

Repository 'samtools_bedcov'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/samtools_bedcov

BedCov tool metadata

Miscellaneous

Name: BedCov

Description: calculate read depth for a set of genomic intervals

Id: samtools_bedcov

Guid: toolshed.g2.bx.psu.edu/repos/devteam/samtools_bedcov/samtools_bedcov/2.0.1

Version: 2.0.1

Version command string: samtools 2>&1 | grep Version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/devteam/samtools_bedcov/samtools_bedcov/2.0.2

toolshed.g2.bx.psu.edu/repos/devteam/samtools_bedcov/samtools_bedcov/2.0.1 (this tool)

toolshed.g2.bx.psu.edu/repos/devteam/samtools_bedcov/samtools_bedcov/2.0

toolshed.g2.bx.psu.edu/repos/devteam/samtools_bedcov/samtools_bedcov/1.0.1

samtools_bedcov

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

samtools

1.3.1

package

Functional tests

name

inputs

outputs

required files

Test-1

input_bed: eboVir3.1.bed
input_bams: eboVir3.bam

output: samtools_bedcov_out1.tab

eboVir3.1.bed
eboVir3.bam
samtools_bedcov_out1.tab

Test-2

input_bed: eboVir3.1.bed
input_bams: ['eboVir3.bam', 'eboVir3.2.bam']

output: samtools_bedcov_out2.tab

eboVir3.1.bed
eboVir3.bam
eboVir3.2.bam
samtools_bedcov_out2.tab