Repository revision
1:6c0373cc070f

Repository 'replace_chromosome_names'
hg clone https://toolshed.g2.bx.psu.edu/repos/earlhaminst/replace_chromosome_names

Replace chromosome names tool metadata
Miscellaneous
in a tabular dataset using a mapping table
replace_chromosome_names
toolshed.g2.bx.psu.edu/repos/earlhaminst/replace_chromosome_names/replace_chromosome_names/0.1
0.1
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/earlhaminst/replace_chromosome_names/replace_chromosome_names/0.1 (this tool)
replace_chromosome_names
Requirements (dependencies defined in the <requirements> tag set)
name version type
python 3.6.1 package
Functional tests
name inputs outputs required files
Test-1 input: gemini_load_input.vcf
comment_char: #
cols: 1
mapping: GRCh37_ensembl2UCSC.txt
output: replace_chromosome_names_output.vcf
gemini_load_input.vcf
GRCh37_ensembl2UCSC.txt
replace_chromosome_names_output.vcf