| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/dongjun/csem/csem/1.0.1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/dongjun/csem/csem/1.0.0 |
| csem |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| csem | not provided | binary |
| bowtie | not provided | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
index: eschColi_K12 InfileFormat: fasta Input: csem_test1_in.fa OutfileFormat: bed pseudoTag: N bSettingsType: preSet cSettingsType: preSet |
out_csem: csem_test1_out_original_sorted.bed |
csem_test1_in.fa csem_test1_out_original_sorted.bed |
| Test-2 |
index: eschColi_K12 InfileFormat: fastq Input: csem_test1_in.fq OutfileFormat: bed pseudoTag: Y bSettingsType: preSet cSettingsType: preSet |
out_csem: csem_test1_out_pseudo_sorted.bed |
csem_test1_in.fq csem_test1_out_pseudo_sorted.bed |