Galaxy |

STAR-Fusion tool metadata

Miscellaneous

Name: STAR-Fusion

Description: detect fusion genes in RNA-Seq data

Id: star_fusion

Guid: toolshed.g2.bx.psu.edu/repos/iuc/star_fusion/star_fusion/0.5.4-3

Version: 0.5.4-3

Version command string: STAR-Fusion --version 2>&1 | grep version | grep -o -E "software version.*?"

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/star_fusion/star_fusion/0.5.4-3+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/star_fusion/star_fusion/0.5.4-3 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/star_fusion/star_fusion/0.5.4-2

star_fusion

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

star-fusion

0.5.4

package

Functional tests

name

inputs

outputs

required files

Test-1

input_params|chimeric_junction: test1.tabular
input_params|input_source: use_chimeric
params|settingsType: default
geneModel: test1.gtf
fasta_type|ownFile: test1.fa
blast_pairs: test1-test1.blastn.tabular
fasta_type|fasta_type_selector: history

attributes: name

test1.tabular
test1.fa
test1.gtf
test1-test1.blastn.tabular
name

Test-2

params|settingsType: default
input_params|input_source: use_fastq
geneModel: test1.gtf
fasta_type|ownFile: test1.fa
blast_pairs: test1-test1.blastn.tabular
input_params|left_fq: test1.fastqsanger
fasta_type|fasta_type_selector: history

attributes: name

test1.fastqsanger
test1.fa
test1.gtf
test1-test1.blastn.tabular
name

Test-3

attributes: name

test1.fastqsanger.gz
test1.fa
test1.gtf
test1-test1.blastn.tabular
name