| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/immport-devteam/fcs_gate_trans/fcs_gate_trans_convert/1.2+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/immport-devteam/fcs_gate_trans/fcs_gate_trans_convert/1.2+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/immport-devteam/fcs_gate_trans/fcs_gate_trans_convert/1.0 |
| fcs_gate_trans_convert |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bioconductor-flowdensity | 1.10.0 | package |
| bioconductor-flowcore | 1.42.0 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input: testfcs1.fcs comp: False transform|trans_method: fcstrans outformat: flowtext gate: False |
attributes: name |
testfcs1.fcs name |
| Test-2 |
input: testfcs1.fcs comp: False transform|trans_method: None outformat: flowtext gate: False |
attributes: name |
testfcs1.fcs name |
| Test-3 |
outformat: flowtext comp: False transform|trans_method: arcsinh gate: False input: testfcs1.fcs transform|scaling_factor: 150 |
attributes: name |
testfcs1.fcs name |
| Test-4 |
input: testfcs1.fcs comp: True transform|trans_method: fcstrans outformat: flowtext gate: True |
attributes: name |
testfcs1.fcs name |
| Test-5 |
input: testfcs1.fcs comp: True transform|trans_method: logicle_auto outformat: flowtext gate: False |
attributes: name |
testfcs1.fcs name |
| Test-6 |
outformat: flowtext comp: True transform|w: 0.4 transform|t: 10000 transform|trans_method: logicle transform|m: 4.5 input: testfcs1.fcs gate: False |
attributes: name |
testfcs1.fcs name |
| Test-7 |
input: testfcs1.fcs comp: True transform|trans_method: fcstrans outformat: flowtext gate: True |
attributes: name attributes: name attributes: name |
testfcs1.fcs name |
| Test-8 |
input: testfcs1.fcs comp: True transform|trans_method: fcstrans outformat: FCS gate: False |
attributes: name |
testfcs1.fcs name |
| Test-9 |
input: testfcs1.fcs comp: True transform|trans_method: fcstrans outformat: flowFrame gate: False |
attributes: name |
testfcs1.fcs name |