Repository revision
9:57aeaf6b237d

Repository 'hicexplorer_chicdifferentialtest'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicdifferentialtest

chicDifferentialTest tool metadata
Miscellaneous
chicDifferentialTest
computes differential interactions of viewpoints
hicexplorer_chicdifferentialtest
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicdifferentialtest/hicexplorer_chicdifferentialtest/3.7.5+galaxy0
3.7.5+galaxy0
chicDifferentialTest --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicdifferentialtest/hicexplorer_chicdifferentialtest/3.7.5+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicdifferentialtest/hicexplorer_chicdifferentialtest/3.7.2+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicdifferentialtest/hicexplorer_chicdifferentialtest/3.6+galaxy1
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicdifferentialtest/hicexplorer_chicdifferentialtest/3.6+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicdifferentialtest/hicexplorer_chicdifferentialtest/3.4.3.1
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicdifferentialtest/hicexplorer_chicdifferentialtest/3.4.3.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicdifferentialtest/hicexplorer_chicdifferentialtest/3.4.2.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicdifferentialtest/hicexplorer_chicdifferentialtest/3.4.1.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicdifferentialtest/hicexplorer_chicdifferentialtest/3.3.1.0
hicexplorer_chicdifferentialtest
Requirements (dependencies defined in the <requirements> tag set)
name version type
hicexplorer 3.7.5 package
Additional information about this tool
#import re
        chicDifferentialTest
            --aggregatedFile $aggregatedFile
            --statisticTest $statisticTest_selector
            --alpha $alpha
            --outFileName differentialFile.hdf5
            --threads \${GALAXY_SLOTS:-4}
None
False
Functional tests
name inputs outputs required files
Test-1 aggregatedFile: cHi-C/chicAggregateStatistic/aggregate.hdf5
alpha: 0.5
statisticTest_selector: chi2
 name: value
 cHi-C/chicAggregateStatistic/aggregate.hdf5
value