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chicDifferentialTest tool metadata

Miscellaneous

Name: chicDifferentialTest

Description: computes differential interactions of viewpoints

Id: hicexplorer_chicdifferentialtest

Guid: toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicdifferentialtest/hicexplorer_chicdifferentialtest/3.4.1.0

Version: 3.4.1.0

Version command string: chicDifferentialTest --version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicdifferentialtest/hicexplorer_chicdifferentialtest/3.4.2.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicdifferentialtest/hicexplorer_chicdifferentialtest/3.4.1.0 (this tool)

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicdifferentialtest/hicexplorer_chicdifferentialtest/3.3.1.0

hicexplorer_chicdifferentialtest

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

hicexplorer

3.4.1

package

Functional tests

name

inputs

outputs

required files

Test-1

alpha: 0.5
batchmode_conditional|interactionFilesOrderFile: cHi-C/chicAggregateStatistic/batch_mode_file_names.txt
batchmode_conditional|batchmode_selector: optionBatchmode
statisticTest_selector: chi2
interactionFiles: ['cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed', 'cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed', 'cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_aggregated.bed', 'cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_aggregated.bed', 'cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.bed', 'cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.bed']

attributes: name

cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed
cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed
cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_aggregated.bed
cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_aggregated.bed
cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.bed
cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.bed
cHi-C/chicAggregateStatistic/batch_mode_file_names.txt
name

Test-2

alpha: 0.5
batchmode_conditional|batchmode_selector: optionSinglemode
statisticTest_selector: fisher
interactionFiles: ['cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed', 'cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed']

cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed
cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed