Repository revision
7:9d878ac82c0f

Repository 'hicexplorer_chicdifferentialtest'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicdifferentialtest

chicDifferentialTest tool metadata
Miscellaneous
computes differential interactions of viewpoints
hicexplorer_chicdifferentialtest
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicdifferentialtest/hicexplorer_chicdifferentialtest/3.6+galaxy1
3.6+galaxy1
chicDifferentialTest --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicdifferentialtest/hicexplorer_chicdifferentialtest/3.7.2+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicdifferentialtest/hicexplorer_chicdifferentialtest/3.6+galaxy1 (this tool)
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicdifferentialtest/hicexplorer_chicdifferentialtest/3.6+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicdifferentialtest/hicexplorer_chicdifferentialtest/3.4.3.1
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicdifferentialtest/hicexplorer_chicdifferentialtest/3.4.3.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicdifferentialtest/hicexplorer_chicdifferentialtest/3.4.2.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicdifferentialtest/hicexplorer_chicdifferentialtest/3.4.1.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicdifferentialtest/hicexplorer_chicdifferentialtest/3.3.1.0
hicexplorer_chicdifferentialtest
Requirements (dependencies defined in the <requirements> tag set)
name version type
hicexplorer 3.6 package
Functional tests
name inputs outputs required files
Test-1 tar_input_conditional|interactionFiles: ['cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt', 'cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt', 'cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_aggregated.txt', 'cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_aggregated.txt', 'cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.txt', 'cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.txt']
tar_input_conditional|tar_input_selector: interval_input
batchmode_conditional|interactionFilesOrderFile: cHi-C/chicAggregateStatistic/batch_mode_file_names.txt
batchmode_conditional|batchmode_selector: optionBatchmode
alpha: 0.5
statisticTest_selector: chi2
name: value
cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt
cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt
cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_aggregated.txt
cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_aggregated.txt
cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.txt
cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.txt
cHi-C/chicAggregateStatistic/batch_mode_file_names.txt
value
Test-2 tar_input_conditional|interactionFiles: ['cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt', 'cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt']
tar_input_conditional|tar_input_selector: interval_input
batchmode_conditional|batchmode_selector: optionSinglemode
alpha: 0.5
statisticTest_selector: fisher
cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt
cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt
Test-3 tar_input_conditional|interactionFiles: ['cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt', 'cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt', 'cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_aggregated.txt', 'cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_aggregated.txt', 'cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.txt', 'cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.txt']
tar_input_conditional|tar_input_selector: interval_input
batchmode_conditional|interactionFilesOrderFile: cHi-C/chicAggregateStatistic/batch_mode_file_names.txt
batchmode_conditional|batchmode_selector: optionBatchmode
alpha: 0.5
statisticTest_selector: chi2
tar: True
name: value
name: value
cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt
cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt
cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_aggregated.txt
cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_aggregated.txt
cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.txt
cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.txt
cHi-C/chicAggregateStatistic/batch_mode_file_names.txt
value
Test-4 tar_input_conditional|interactionFiles: cHi-C/chicAggregateStatistic/batch_mode.tar
tar_input_conditional|tar_input_selector: tar_input
batchmode_conditional|interactionFilesOrderFile: cHi-C/chicAggregateStatistic/batch_mode_file_names.txt
batchmode_conditional|batchmode_selector: optionBatchmode
alpha: 0.5
statisticTest_selector: chi2
tar: True
name: value
name: value
cHi-C/chicAggregateStatistic/batch_mode.tar
cHi-C/chicAggregateStatistic/batch_mode_file_names.txt
value