Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicdifferentialtest/hicexplorer_chicdifferentialtest/3.7.2+galaxy0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicdifferentialtest/hicexplorer_chicdifferentialtest/3.6+galaxy1 (this tool) |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicdifferentialtest/hicexplorer_chicdifferentialtest/3.6+galaxy0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicdifferentialtest/hicexplorer_chicdifferentialtest/3.4.3.1 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicdifferentialtest/hicexplorer_chicdifferentialtest/3.4.3.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicdifferentialtest/hicexplorer_chicdifferentialtest/3.4.2.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicdifferentialtest/hicexplorer_chicdifferentialtest/3.4.1.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicdifferentialtest/hicexplorer_chicdifferentialtest/3.3.1.0 |
hicexplorer_chicdifferentialtest |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
hicexplorer | 3.6 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
tar_input_conditional|interactionFiles: ['cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt', 'cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt', 'cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_aggregated.txt', 'cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_aggregated.txt', 'cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.txt', 'cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.txt'] tar_input_conditional|tar_input_selector: interval_input batchmode_conditional|interactionFilesOrderFile: cHi-C/chicAggregateStatistic/batch_mode_file_names.txt batchmode_conditional|batchmode_selector: optionBatchmode alpha: 0.5 statisticTest_selector: chi2 |
name: value |
cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_aggregated.txt cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_aggregated.txt cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.txt cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.txt cHi-C/chicAggregateStatistic/batch_mode_file_names.txt value |
Test-2 |
tar_input_conditional|interactionFiles: ['cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt', 'cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt'] tar_input_conditional|tar_input_selector: interval_input batchmode_conditional|batchmode_selector: optionSinglemode alpha: 0.5 statisticTest_selector: fisher |
cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt |
|
Test-3 |
tar_input_conditional|interactionFiles: ['cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt', 'cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt', 'cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_aggregated.txt', 'cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_aggregated.txt', 'cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.txt', 'cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.txt'] tar_input_conditional|tar_input_selector: interval_input batchmode_conditional|interactionFilesOrderFile: cHi-C/chicAggregateStatistic/batch_mode_file_names.txt batchmode_conditional|batchmode_selector: optionBatchmode alpha: 0.5 statisticTest_selector: chi2 tar: True |
name: value name: value |
cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.txt cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_aggregated.txt cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_aggregated.txt cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.txt cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.txt cHi-C/chicAggregateStatistic/batch_mode_file_names.txt value |
Test-4 |
tar_input_conditional|interactionFiles: cHi-C/chicAggregateStatistic/batch_mode.tar tar_input_conditional|tar_input_selector: tar_input batchmode_conditional|interactionFilesOrderFile: cHi-C/chicAggregateStatistic/batch_mode_file_names.txt batchmode_conditional|batchmode_selector: optionBatchmode alpha: 0.5 statisticTest_selector: chi2 tar: True |
name: value name: value |
cHi-C/chicAggregateStatistic/batch_mode.tar cHi-C/chicAggregateStatistic/batch_mode_file_names.txt value |