Repository revision

Revision: 1:5adf9db15edc

Repository 'assembly'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/cole_easson/assembly

velveth tool metadata

Miscellaneous

Name: velveth

Description: Prepare a dataset for the Velvet velvetg Assembler

Id: velveth

Guid: toolshed.g2.bx.psu.edu/repos/cole_easson/assembly/velveth/1.2.10.0

Version: 1.2.10.0

Version command string: velveth 2>&1 | grep "Version" | sed -e 's/Version //'

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/cole_easson/assembly/velveth/1.2.10.0 (this tool)

velveth

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

velvet

1.2.10

package

Additional information about this tool

Command:

velveth_wrapper.py
           '$out_file1' '$out_file1.extra_files_path'
           $hash_length
           $strand_specific
           #for $i in $inputs
                ${i.file_format}
                ${i.read_type}
                ${i.input}
           #end for

Interpreter: python

Forces a history refresh: False

Functional tests

name

inputs

outputs

required files

Test-1

inputs_1|read_type: -shortPaired
hash_length: 21
inputs_0|input: velvet_test_reads.fa
strand_specific: False
inputs_0|file_format: -fasta
inputs_0|read_type: -shortPaired

out_file1: output.html

velvet_test_reads.fa
velveth_test1/output.html