| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/translate_bed/translate_bed/0.1.0 (this tool) |
| translate_bed |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| requests-cache | 0.4.10 | package |
| biopython | 1.62 | package |
| twobitreader | 3.1.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
translations|translate: cDNA_minus_CDS input: human_transcripts.bed ref|ref_source: ensembl_rest |
translation_bed: None translation_fasta: None |
human_transcripts.bed |
| Test-2 |
translations|translate: cDNA_minus_CDS input: human_transcripts_seq.bed ref|ref_source: last_column |
translation_bed: None translation_fasta: None |
human_transcripts_seq.bed |
| Test-3 |
translations|translate: CDS input: human_transcripts_seq.bed ref|ref_source: last_column |
translation_bed: None translation_fasta: None |
human_transcripts_seq.bed |
| Test-4 |
fa_id|id_prefix: test_ ref|ref_source: last_column translations|start_codon: False fa_id|fa_db: generic translations|translate: cDNA_minus_CDS input: human_transcripts_seq.bed bed_filters|biotypes: protein_coding |
translation_bed: None translation_fasta: None |
human_transcripts_seq.bed |
| Test-5 |
fa_id|id_prefix: test_ ref|ref_source: last_column translations|start_codon: True fa_id|fa_db: generic translations|translate: cDNA_minus_CDS input: human_transcripts_seq.bed bed_filters|biotypes: protein_coding |
translation_bed: None translation_fasta: None |
human_transcripts_seq.bed |
| Test-6 |
fa_id|id_prefix: test_ ref|ref_source: history translations|start_codon: True fa_id|fa_db: generic ref|ref_file: GRCh38.1.2bit translations|translate: cDNA_minus_CDS input: human_transcripts.bed bed_filters|regions: 1:0-30000 |
translation_bed: None translation_fasta: None |
human_transcripts.bed GRCh38.1.2bit |