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Repository revision

Revision: 8:a6c4483a02be

Repository 'gafa'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/earlhaminst/gafa

Gene Align and Family Aggregator tool metadata

Miscellaneous

Name: Gene Align and Family Aggregator

Description: generates an SQLite database that can be visualised with Aequatus

Id: gafa

Guid: toolshed.g2.bx.psu.edu/repos/earlhaminst/gafa/gafa/0.3.1

Version: 0.3.1

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/earlhaminst/gafa/gafa/0.4.0

toolshed.g2.bx.psu.edu/repos/earlhaminst/gafa/gafa/0.3.1 (this tool)

toolshed.g2.bx.psu.edu/repos/earlhaminst/gafa/gafa/0.3.0

toolshed.g2.bx.psu.edu/repos/earlhaminst/gafa/gafa/0.2.0

toolshed.g2.bx.psu.edu/repos/earlhaminst/gafa/gafa/0.1.0

gafa

Requirements (dependencies defined in the <requirements> tag set)

No requirements defined

Functional tests

name

inputs

outputs

required files

Test-1

treeFile: ['tree1.nhx', 'tree2.nhx', 'tree3.nhx', 'tree4.nhx']
alignmentFile: ['align1.fasta', 'align2.fasta', 'align3.fasta', 'align4.fasta']
genesFile: gene.sqlite

name: value

tree1.nhx
tree2.nhx
tree3.nhx
tree4.nhx
align1.fasta
align2.fasta
align3.fasta
align4.fasta
gene.sqlite
value