Repository revision

Revision: 1:502024707de4

Repository 'mothur_chimera_ccode'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/mothur_chimera_ccode

Chimera.ccode tool metadata

Miscellaneous

Name: Chimera.ccode

Description: Find putative chimeras using ccode

Id: mothur_chimera_ccode

Guid: toolshed.g2.bx.psu.edu/repos/iuc/mothur_chimera_ccode/mothur_chimera_ccode/1.36.1.0

Version: 1.36.1.0

Version command string: mothur "#help()" | sed '7q;d' | cut -d" " -f2

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/mothur_chimera_ccode/mothur_chimera_ccode/1.39.5.0

toolshed.g2.bx.psu.edu/repos/iuc/mothur_chimera_ccode/mothur_chimera_ccode/1.36.1.0 (this tool)

mothur_chimera_ccode

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

mothur

1.36.1

package

Functional tests

name

inputs

outputs

required files

Test-1

alignment|template: HMP_MOCK.v35.align
fasta: Mock_S280_L001_R1_001_small.trim.contigs.good.align_head
alignment|source: hist

out_file: None
out_accnos: Mock_S280_L001_R1_001_small.trim.contigs.good.ccode.accnos
mapinfo: None
logfile: None

Mock_S280_L001_R1_001_small.trim.contigs.good.align_head
HMP_MOCK.v35.align
Mock_S280_L001_R1_001_small.trim.contigs.good.ccode.accnos

Test-2

alignment|template: HMP_MOCK.v35.align
fasta: Mock_S280_L001_R1_001_small.trim.contigs.good.align_head
window: 100
alignment|source: hist
mask|source2: default

out_file: None
out_accnos: None
mapinfo: None
logfile: None

Mock_S280_L001_R1_001_small.trim.contigs.good.align_head
HMP_MOCK.v35.align