| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/cnvkit_call/cnvkit_call/0.9.10+galaxy0.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/cnvkit_call/cnvkit_call/0.9.10+galaxy0 (this tool) |
| cnvkit_call |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| cnvkit | 0.9.10 | package |
| scikit-learn | 1.0.2 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_sample_file: tumor.cns additional_SNP_allelic_process|min_variant_depth: 40 additional_SNP_allelic_process|zygosity_freq: 0.25 advanced_settings|purity: 1 |
name: value |
tumor.cns value |
| Test-2 |
input_sample_file: tumor.cns additional_SNP_allelic_process|min_variant_depth: 40 advanced_settings|purity: 1 advanced_settings|Sample_sex|sex: yes |
name: value |
tumor.cns value |