| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/keras_batch_models/keras_batch_models/1.0.11.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/keras_batch_models/keras_batch_models/1.0.10.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/keras_batch_models/keras_batch_models/0.5.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/keras_batch_models/keras_batch_models/0.4.2 |
| toolshed.g2.bx.psu.edu/repos/bgruening/keras_batch_models/keras_batch_models/0.4.0 |
| keras_batch_models |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| python | 3.9 | package |
| galaxy-ml | 0.10.0 | package |
| Additional information about this tool |
python '$__tool_directory__/keras_deep_learning.py'
--inputs '$inputs'
--model_json '$mode_selection.infile_json'
--tool_id 'keras_batch_models'
--outfile '$outfile'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
mode_selection|infile_json: keras05.json mode_selection|learning_type: KerasGBatchClassifier mode_selection|generator_selection|generator_type: none mode_selection|compile_params|loss: categorical_crossentropy mode_selection|compile_params|optimizer_selection|optimizer_type: RMSprop mode_selection|compile_params|metrics: ['acc', 'categorical_accuracy'] mode_selection|fit_params|epochs: 100 mode_selection|fit_params|callbacks_0|callback_selection|callback_type: None |
name: value |
keras05.json value |
| Test-2 |
mode_selection|infile_json: keras01.json mode_selection|learning_type: KerasGBatchClassifier mode_selection|generator_selection|generator_type: none mode_selection|fit_params|epochs: 100 mode_selection|fit_params|callbacks_0|callback_selection|callback_type: None |
name: value |
keras01.json value |
| Test-3 |
mode_selection|infile_json: deepsear_1feature.json mode_selection|learning_type: KerasGBatchClassifier mode_selection|generator_selection|seed: 999 mode_selection|generator_selection|generator_type: GenomicIntervalBatchGenerator mode_selection|fit_params|epochs: 100 |
name: value |
deepsear_1feature.json value |
| Test-4 |
mode_selection|infile_json: keras01.json mode_selection|learning_type: KerasGBatchClassifier mode_selection|generator_selection|seed: 999 mode_selection|generator_selection|generator_type: FastaDNABatchGenerator mode_selection|fit_params|epochs: 100 mode_selection|fit_params|callbacks_0|callback_selection|monitor: val_loss mode_selection|fit_params|callbacks_0|callback_selection|callback_type: EarlyStopping |
name: value |
keras01.json value |
| Test-5 |
mode_selection|infile_json: keras01.json mode_selection|learning_type: KerasGBatchClassifier mode_selection|generator_selection|seed: 999 mode_selection|generator_selection|generator_type: FastaDNABatchGenerator mode_selection|fit_params|epochs: 100 mode_selection|fit_params|callbacks_0|callback_selection|callback_type: None |
name: value |
keras01.json value |