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Repository revision

Revision: 9:16f6d606521a

Repository 'mothur_create_database'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/mothur_create_database

Create.database tool metadata

Miscellaneous

Name: Create.database

Description: creates a database file from a list, repnames, repfasta and contaxonomy file

Id: mothur_create_database

Guid: toolshed.g2.bx.psu.edu/repos/iuc/mothur_create_database/mothur_create_database/1.39.5.0

Version: 1.39.5.0

Version command string: mothur "#help()" | sed '7q;d' | cut -d" " -f2

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/mothur_create_database/mothur_create_database/1.39.5.0 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/mothur_create_database/mothur_create_database/1.36.1.0

mothur_create_database

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

mothur

1.39.5

package

Functional tests

name

inputs

outputs

required files

Test-1

otu: cd-test.list
repfasta: cd-test.repfasta
nameOrCount: cd-test.repname
constaxonomy: cd-test.constaxonomy
label: unique
savelog: True

name: value
name: value

cd-test.list
cd-test.repfasta
cd-test.repname
cd-test.constaxonomy
value

Test-2

otu: cd-test.list
repfasta: cd-test.repfasta
nameOrCount: cd-test.count_table
constaxonomy: cd-test.constaxonomy
label: unique
savelog: True

name: value
name: value

cd-test.list
cd-test.repfasta
cd-test.count_table
cd-test.constaxonomy
value