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Revision: 12:f1604a5673a3

Repository 'openms_featurelinkerunlabeledqt'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/openms_featurelinkerunlabeledqt

FeatureLinkerUnlabeledQT tool metadata

Miscellaneous

Name: FeatureLinkerUnlabeledQT

Description: Groups corresponding features from multiple maps.

Id: FeatureLinkerUnlabeledQT

Guid: toolshed.g2.bx.psu.edu/repos/galaxyp/openms_featurelinkerunlabeledqt/FeatureLinkerUnlabeledQT/2.5+galaxy0

Version: 2.5+galaxy0

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/galaxyp/openms_featurelinkerunlabeledqt/FeatureLinkerUnlabeledQT/2.6+galaxy0

toolshed.g2.bx.psu.edu/repos/galaxyp/openms_featurelinkerunlabeledqt/FeatureLinkerUnlabeledQT/2.5+galaxy0 (this tool)

toolshed.g2.bx.psu.edu/repos/galaxyp/openms_featurelinkerunlabeledqt/FeatureLinkerUnlabeledQT/2.3.0

toolshed.g2.bx.psu.edu/repos/galaxyp/openms_featurelinkerunlabeledqt/FeatureLinkerUnlabeledQT/2.2.0

toolshed.g2.bx.psu.edu/repos/galaxyp/openms_featurelinkerunlabeledqt/FeatureLinkerUnlabeledQT/2.1.0

FeatureLinkerUnlabeledQT

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

openms

2.5

package

openms-thirdparty

2.5

package

blast

2.9.0

package

openjdk

8.0.192

package

ctdopts

1.4

package

Functional tests

name

inputs

outputs

required files

Test-1

in: ['FeatureLinkerUnlabeled_1_input1.featureXML', 'FeatureLinkerUnlabeled_1_input2.featureXML', 'FeatureLinkerUnlabeled_1_input3.featureXML']
keep_subelements: False
algorithm|use_identifications: False
algorithm|nr_partitions: 100
algorithm|ignore_charge: False
algorithm|ignore_adduct: True
algorithm|distance_RT|max_difference: 100.0
algorithm|distance_RT|exponent: 1.0
algorithm|distance_RT|weight: 1.0
algorithm|distance_MZ|max_difference: 0.3
algorithm|distance_MZ|unit: Da
algorithm|distance_MZ|exponent: 2.0
algorithm|distance_MZ|weight: 1.0
algorithm|distance_intensity|exponent: 1.0
algorithm|distance_intensity|weight: 0.0
algorithm|distance_intensity|log_transform: disabled
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG

name: value
name: value

FeatureLinkerUnlabeled_1_input1.featureXML
FeatureLinkerUnlabeled_1_input2.featureXML
FeatureLinkerUnlabeled_1_input3.featureXML
value

Test-2

in: ['FeatureLinkerUnlabeledQT_1_output.consensusXML', 'FeatureLinkerUnlabeledQT_1_output_2.consensusXML']
keep_subelements: True
algorithm|use_identifications: False
algorithm|nr_partitions: 100
algorithm|ignore_charge: False
algorithm|ignore_adduct: True
algorithm|distance_RT|max_difference: 100.0
algorithm|distance_RT|exponent: 1.0
algorithm|distance_RT|weight: 1.0
algorithm|distance_MZ|max_difference: 0.3
algorithm|distance_MZ|unit: Da
algorithm|distance_MZ|exponent: 2.0
algorithm|distance_MZ|weight: 1.0
algorithm|distance_intensity|exponent: 1.0
algorithm|distance_intensity|weight: 0.0
algorithm|distance_intensity|log_transform: disabled
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG

name: value
name: value

FeatureLinkerUnlabeledQT_1_output.consensusXML
FeatureLinkerUnlabeledQT_1_output_2.consensusXML
value

Test-3

in: ['FeatureLinkerUnlabeledQT_3_input1.featureXML', 'FeatureLinkerUnlabeledQT_3_input2.featureXML']
keep_subelements: False
algorithm|use_identifications: False
algorithm|nr_partitions: 99999
algorithm|ignore_charge: False
algorithm|ignore_adduct: True
algorithm|distance_RT|max_difference: 100.0
algorithm|distance_RT|exponent: 1.0
algorithm|distance_RT|weight: 1.0
algorithm|distance_MZ|max_difference: 0.3
algorithm|distance_MZ|unit: Da
algorithm|distance_MZ|exponent: 2.0
algorithm|distance_MZ|weight: 1.0
algorithm|distance_intensity|exponent: 1.0
algorithm|distance_intensity|weight: 0.0
algorithm|distance_intensity|log_transform: disabled
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG

name: value
name: value

FeatureLinkerUnlabeledQT_3_input1.featureXML
FeatureLinkerUnlabeledQT_3_input2.featureXML
value

Test-4

in: ['FeatureLinkerUnlabeled_1_input1.featureXML', 'FeatureLinkerUnlabeled_1_input2.featureXML', 'FeatureLinkerUnlabeled_1_input3.featureXML']
keep_subelements: False
algorithm|use_identifications: True
algorithm|nr_partitions: 100
algorithm|ignore_charge: False
algorithm|ignore_adduct: True
algorithm|distance_RT|max_difference: 100.0
algorithm|distance_RT|exponent: 1.0
algorithm|distance_RT|weight: 1.0
algorithm|distance_MZ|max_difference: 0.3
algorithm|distance_MZ|unit: Da
algorithm|distance_MZ|exponent: 2.0
algorithm|distance_MZ|weight: 1.0
algorithm|distance_intensity|exponent: 1.0
algorithm|distance_intensity|weight: 0.0
algorithm|distance_intensity|log_transform: disabled
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG

name: value
name: value

FeatureLinkerUnlabeled_1_input1.featureXML
FeatureLinkerUnlabeled_1_input2.featureXML
FeatureLinkerUnlabeled_1_input3.featureXML
value

Test-5

in: ['FeatureLinkerUnlabeledQT_5_input1.featureXML', 'FeatureLinkerUnlabeledQT_5_input2.featureXML', 'FeatureLinkerUnlabeledQT_5_input3.featureXML']
keep_subelements: False
algorithm|use_identifications: False
algorithm|nr_partitions: 100
algorithm|ignore_charge: False
algorithm|ignore_adduct: True
algorithm|distance_RT|max_difference: 200.0
algorithm|distance_RT|exponent: 1.0
algorithm|distance_RT|weight: 1.0
algorithm|distance_MZ|max_difference: 0.3
algorithm|distance_MZ|unit: Da
algorithm|distance_MZ|exponent: 2.0
algorithm|distance_MZ|weight: 1.0
algorithm|distance_intensity|exponent: 1.0
algorithm|distance_intensity|weight: 0.0
algorithm|distance_intensity|log_transform: disabled
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG

name: value
name: value

FeatureLinkerUnlabeledQT_5_input1.featureXML
FeatureLinkerUnlabeledQT_5_input2.featureXML
FeatureLinkerUnlabeledQT_5_input3.featureXML
value

Test-6

in: ['FeatureLinkerUnlabeledQT_5_input1.featureXML', 'FeatureLinkerUnlabeledQT_5_input2.featureXML', 'FeatureLinkerUnlabeledQT_5_input3.featureXML']
keep_subelements: False
algorithm|use_identifications: True
algorithm|nr_partitions: 100
algorithm|ignore_charge: False
algorithm|ignore_adduct: True
algorithm|distance_RT|max_difference: 200.0
algorithm|distance_RT|exponent: 1.0
algorithm|distance_RT|weight: 1.0
algorithm|distance_MZ|max_difference: 0.3
algorithm|distance_MZ|unit: Da
algorithm|distance_MZ|exponent: 2.0
algorithm|distance_MZ|weight: 1.0
algorithm|distance_intensity|exponent: 1.0
algorithm|distance_intensity|weight: 0.0
algorithm|distance_intensity|log_transform: disabled
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG

name: value
name: value

FeatureLinkerUnlabeledQT_5_input1.featureXML
FeatureLinkerUnlabeledQT_5_input2.featureXML
FeatureLinkerUnlabeledQT_5_input3.featureXML
value