| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/stacks_procrad/stacks_procrad/1.46.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/stacks_procrad/stacks_procrad/1.42.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/stacks_procrad/stacks_procrad/1.40.2 |
| toolshed.g2.bx.psu.edu/repos/iuc/stacks_procrad/stacks_procrad/1.40.1 |
| stacks_procrad |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| stacks | 1.46 | package |
| velvet | 1.2.10 | package |
| stacks_summary | 1.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_type|input_single: procrad/R1.fq input_type|options_type_selector: single barcode: procrad/barcodes options_enzyme|enzyme: ecoRI options_enzyme|options_enzyme_selector: 1 capture: True options_advanced|discard: True |
name: value |
procrad/R1.fq procrad/barcodes value |
| Test-2 |
input_type|input_single: procrad/R1.fq input_type|options_type_selector: single barcode: procrad/barcodes options_enzyme|enzyme: ecoRI options_enzyme|options_enzyme_selector: 1 capture: True options_advanced|discard: True outype: gzfastq |
name: value |
procrad/R1.fq procrad/barcodes value |
| Test-3 |
input_type|inputs_paired1: procrad/R1.fq input_type|inputs_paired2: procrad/R2.fq input_type|options_type_selector: paired barcode: procrad/barcodes options_enzyme|enzyme: ecoRI options_enzyme|options_enzyme_selector: 1 capture: True options_advanced|discard: True |
name: value |
procrad/R1.fq procrad/R2.fq procrad/barcodes value |
| Test-4 |
input_type|inputs_paired1: procrad/R1.fq input_type|inputs_paired2: procrad/R2.fq input_type|options_type_selector: paired barcode: procrad/barcodes options_enzyme|enzyme: ecoRI options_enzyme|options_enzyme_selector: 1 capture: True options_advanced|discard: True options_advanced|retain_header: True |
name: value |
procrad/R1.fq procrad/R2.fq procrad/barcodes value |
| Test-5 |
input_type|inputs_paired1: procrad/R1.fq input_type|inputs_paired2: procrad/R2.fq input_type|options_type_selector: paired barcode: procrad/barcodes options_enzyme|enzyme: ecoRI options_enzyme|options_enzyme_selector: 1 capture: True options_advanced|discard: True outype: fasta |
name: value |
procrad/R1.fq procrad/R2.fq procrad/barcodes value |
| Test-6 |
input_type|input_single: procrad/R1.fq.gzip input_type|options_type_selector: single barcode: procrad/barcodes options_enzyme|enzyme: ecoRI options_enzyme|options_enzyme_selector: 1 capture: True options_advanced|discard: True |
name: value |
procrad/R1.fq.gzip procrad/barcodes value |
| Test-7 |
input_type|input_single: procrad/R1.fq.gzip input_type|options_type_selector: single barcode: procrad/barcodes options_enzyme|enzyme: ecoRI options_enzyme|options_enzyme_selector: 1 capture: True options_advanced|discard: True outype: gzfastq |
name: value |
procrad/R1.fq.gzip procrad/barcodes value |