| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/gemini_inheritance/gemini_inheritance/0.20.1 (this tool) |
| gemini_inheritance |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| gemini | 0.20.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
oformat|report|report_selector: minimal infile: gemini_auto_dom_input.db inheritance|lenient: True inheritance|pattern_type: autosomal_dominant |
attributes: name |
gemini_auto_dom_input.db name |
| Test-2 |
oformat|report|report_selector: custom oformat|report|columns: ['gene', 'chrom', 'impact'] infile: gemini_auto_dom_input.db inheritance|lenient: True inheritance|pattern_type: autosomal_dominant |
attributes: name |
gemini_auto_dom_input.db name |
| Test-3 |
oformat|report|report_selector: custom inheritance|pattern_type: autosomal_dominant oformat|report|extra_cols: gene,chrom,impact inheritance|lenient: True infile: gemini_auto_dom_input.db |
attributes: name |
gemini_auto_dom_input.db name |
| Test-4 |
oformat|report|report_selector: custom oformat|report|columns: ['gene', 'chrom', 'impact'] infile: gemini_auto_rec_input.db inheritance|lenient: True inheritance|pattern_type: autosomal_recessive |
attributes: name |
gemini_auto_rec_input.db name |
| Test-5 |
oformat|report|report_selector: custom oformat|report|columns: ['gene', 'ref', 'alt', 'impact'] infile: gemini_de_novo_input.db inheritance|pattern_type: de_novo |
attributes: name |
gemini_de_novo_input.db name |
| Test-6 |
inheritance|allow_unaffected: True oformat|report|report_selector: custom oformat|report|columns: ['chrom', 'start', 'end', 'ref', 'alt', 'gene', 'impact'] inheritance|pattern_type: comp_hets inheritance|lenient: True infile: gemini_comphets_input.db |
attributes: name |
gemini_comphets_input.db name |
| Test-7 |
oformat|report|report_selector: custom oformat|report|columns: ['gene', 'ref', 'alt', 'impact'] infile: gemini_de_novo_input.db inheritance|pattern_type: mendel_errors |
attributes: name |
gemini_de_novo_input.db name |