Repository revision
5:14267d364365

Repository 'rsem'
hg clone https://toolshed.g2.bx.psu.edu/repos/jjohnson/rsem

RSEM calculate expression tool metadata
Miscellaneous
RNA-Seq by Expectation-Maximization
rsem_calculate_expression
toolshed.g2.bx.psu.edu/repos/jjohnson/rsem/rsem_calculate_expression/1.1.17
1.1.17
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/jjohnson/rsem/rsem_calculate_expression/1.1.17 (this tool)
rsem_calculate_expression
Requirements (dependencies defined in the <requirements> tag set)
name version type
rsem 1.1.17 package
bowtie 1.0.0 package
Functional tests
name inputs outputs required files
Test-1 input|format: fastq
input|fastq|singlefastq: test.fastq
reference|refSrc: history
sample: rsem_sample
reference|rsem_ref: RSEM_ref_reference.rsem_ref
input|fastq|matepair: single
rsem_outputs|result_bams: none
gene_abundances: None
isoform_abundances: None
log: None
RSEM_ref_reference.rsem_ref
test.fastq