Repository revision
3:920677cd220f

Repository 'velvet'
hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/velvet

velveth tool metadata
Miscellaneous
velveth
Prepare a dataset for the Velvet velvetg Assembler
velveth
toolshed.g2.bx.psu.edu/repos/devteam/velvet/velveth/1.2.10.3
1.2.10.3
velveth 2>&1 | grep "Version" | sed -e 's/Version //'
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/devteam/velvet/velveth/1.2.10.3 (this tool)
toolshed.g2.bx.psu.edu/repos/devteam/velvet/velveth/1.2.10.0
velveth
Requirements (dependencies defined in the <requirements> tag set)
name version type
velvet 1.2.10 package
Additional information about this tool
export OMP_NUM_THREADS="\${GALAXY_SLOTS:-1}" &&
    mkdir -p '${outfile.extra_files_path}' &&
    velveth
      '$outfile.extra_files_path'
      $hash_length
      #for $i in $inputs
        -fmtAuto 
        ${i.input_type.read_type}
        #if str( $i.input_type.input_type_selector ) == "paireds":
          -separate '${i.input_type.input}' '${i.input_type.input2}'
        #else if str( $i.input_type.input_type_selector ) == "pairedi":
          -interleaved '${i.input_type.input}'
        #else:
          '${i.input_type.input}'
        #end if
      #end for
      $strand_specific
  
None
False
Functional tests
name inputs outputs required files
Test-1 hash_length: 21
strand_specific: False
inputs_0|input_type|read_type: -shortPaired
inputs_0|input_type|input2: R2.fastq
inputs_0|input_type|input_type_selector: paireds
name: value
R2.fastq
value
Test-2 hash_length: 21
strand_specific: False
inputs_0|input_type|read_type: -short
inputs_0|input_type|input: R1.fastq
inputs_0|input_type|input_type_selector: single
name: value
R1.fastq
value
Test-3 hash_length: 21
strand_specific: False
inputs_0|input_type|read_type: -short
inputs_0|input_type|input: R1.fastq
inputs_0|input_type|input_type_selector: single
inputs_1|input_type|read_type: -short2
inputs_1|input_type|input: R2.fastq
inputs_1|input_type|input_type_selector: single
name: value
R1.fastq
R2.fastq
value