| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mapaligneridentification/MapAlignerIdentification/2.6+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mapaligneridentification/MapAlignerIdentification/2.5+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mapaligneridentification/MapAlignerIdentification/2.3.0 |
| MapAlignerIdentification |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| openms | 2.5 | package |
| openms-thirdparty | 2.5 | package |
| blast | 2.9.0 | package |
| openjdk | 8.0.192 | package |
| ctdopts | 1.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
in: ['MapAlignerIdentification_1_input1.featureXML', 'MapAlignerIdentification_1_input2.featureXML'] reference|index: 0 algorithm|score_cutoff: False algorithm|min_score: 0.05 algorithm|min_run_occur: 2 algorithm|max_rt_shift: 0.0 algorithm|use_unassigned_peptides: True algorithm|use_feature_rt: False model|type: b_spline model|linear|symmetric_regression: False model|linear|x_weight: model|linear|y_weight: model|linear|x_datum_min: 1e-15 model|linear|x_datum_max: 1000000000000000.0 model|linear|y_datum_min: 1e-15 model|linear|y_datum_max: 1000000000000000.0 model|b_spline|wavelength: 0.0 model|b_spline|num_nodes: 5 model|b_spline|extrapolate: linear model|b_spline|boundary_condition: 2 model|lowess|span: 0.666666666666667 model|lowess|num_iterations: 3 model|lowess|delta: -1.0 model|lowess|interpolation_type: cspline model|lowess|extrapolation_type: four-point-linear model|interpolated|interpolation_type: cspline model|interpolated|extrapolation_type: two-point-linear adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_FLAG'] |
name: value |
MapAlignerIdentification_1_input1.featureXML MapAlignerIdentification_1_input2.featureXML value |
| Test-2 |
in: MapAlignerIdentification_1_input1.featureXML reference|file: MapAlignerIdentification_1_input2.featureXML reference|index: 0 algorithm|score_cutoff: False algorithm|min_score: 0.05 algorithm|min_run_occur: 2 algorithm|max_rt_shift: 0.0 algorithm|use_unassigned_peptides: True algorithm|use_feature_rt: False model|type: b_spline model|linear|symmetric_regression: False model|linear|x_weight: model|linear|y_weight: model|linear|x_datum_min: 1e-15 model|linear|x_datum_max: 1000000000000000.0 model|linear|y_datum_min: 1e-15 model|linear|y_datum_max: 1000000000000000.0 model|b_spline|wavelength: 0.0 model|b_spline|num_nodes: 5 model|b_spline|extrapolate: linear model|b_spline|boundary_condition: 2 model|lowess|span: 0.666666666666667 model|lowess|num_iterations: 3 model|lowess|delta: -1.0 model|lowess|interpolation_type: cspline model|lowess|extrapolation_type: four-point-linear model|interpolated|interpolation_type: cspline model|interpolated|extrapolation_type: two-point-linear adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_FLAG'] |
name: value |
MapAlignerIdentification_1_input1.featureXML MapAlignerIdentification_1_input2.featureXML value |
| Test-3 |
in: ['MapAlignerIdentification_1_input2.featureXML', 'MapAlignerIdentification_1_input1.featureXML'] reference|index: 1 algorithm|score_cutoff: False algorithm|min_score: 0.05 algorithm|min_run_occur: 2 algorithm|max_rt_shift: 0.0 algorithm|use_unassigned_peptides: True algorithm|use_feature_rt: False model|type: b_spline model|linear|symmetric_regression: False model|linear|x_weight: model|linear|y_weight: model|linear|x_datum_min: 1e-15 model|linear|x_datum_max: 1000000000000000.0 model|linear|y_datum_min: 1e-15 model|linear|y_datum_max: 1000000000000000.0 model|b_spline|wavelength: 0.0 model|b_spline|num_nodes: 5 model|b_spline|extrapolate: linear model|b_spline|boundary_condition: 2 model|lowess|span: 0.666666666666667 model|lowess|num_iterations: 3 model|lowess|delta: -1.0 model|lowess|interpolation_type: cspline model|lowess|extrapolation_type: four-point-linear model|interpolated|interpolation_type: cspline model|interpolated|extrapolation_type: two-point-linear adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_FLAG'] |
name: value |
MapAlignerIdentification_1_input2.featureXML MapAlignerIdentification_1_input1.featureXML value |
| Test-4 |
in: ['MapAlignerIdentification_1_input1.featureXML', 'MapAlignerIdentification_1_input2.featureXML'] reference|index: 2 algorithm|score_cutoff: False algorithm|min_score: 0.05 algorithm|min_run_occur: 2 algorithm|max_rt_shift: 0.0 algorithm|use_unassigned_peptides: True algorithm|use_feature_rt: False model|type: b_spline model|linear|symmetric_regression: False model|linear|x_weight: model|linear|y_weight: model|linear|x_datum_min: 1e-15 model|linear|x_datum_max: 1000000000000000.0 model|linear|y_datum_min: 1e-15 model|linear|y_datum_max: 1000000000000000.0 model|b_spline|wavelength: 0.0 model|b_spline|num_nodes: 5 model|b_spline|extrapolate: linear model|b_spline|boundary_condition: 2 model|lowess|span: 0.666666666666667 model|lowess|num_iterations: 3 model|lowess|delta: -1.0 model|lowess|interpolation_type: cspline model|lowess|extrapolation_type: four-point-linear model|interpolated|interpolation_type: cspline model|interpolated|extrapolation_type: two-point-linear adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_FLAG'] |
name: value |
MapAlignerIdentification_1_input1.featureXML MapAlignerIdentification_1_input2.featureXML value |
| Test-5 |
in: ['MapAlignerIdentification_5_input1.consensusXML', 'MapAlignerIdentification_5_input2.consensusXML'] reference|index: 0 algorithm|score_cutoff: False algorithm|min_score: 0.05 algorithm|min_run_occur: 2 algorithm|max_rt_shift: 0.0 algorithm|use_unassigned_peptides: True algorithm|use_feature_rt: False model|type: b_spline model|linear|symmetric_regression: False model|linear|x_weight: model|linear|y_weight: model|linear|x_datum_min: 1e-15 model|linear|x_datum_max: 1000000000000000.0 model|linear|y_datum_min: 1e-15 model|linear|y_datum_max: 1000000000000000.0 model|b_spline|wavelength: 0.0 model|b_spline|num_nodes: 5 model|b_spline|extrapolate: linear model|b_spline|boundary_condition: 2 model|lowess|span: 0.666666666666667 model|lowess|num_iterations: 3 model|lowess|delta: -1.0 model|lowess|interpolation_type: cspline model|lowess|extrapolation_type: four-point-linear model|interpolated|interpolation_type: cspline model|interpolated|extrapolation_type: two-point-linear adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_FLAG'] |
name: value |
MapAlignerIdentification_5_input1.consensusXML MapAlignerIdentification_5_input2.consensusXML value |
| Test-6 |
in: MapAlignerIdentification_1_input1.featureXML reference|file: MapAlignerIdentification_1_input2.featureXML reference|index: 0 algorithm|score_cutoff: False algorithm|min_score: 0.05 algorithm|min_run_occur: 2 algorithm|max_rt_shift: 0.0 algorithm|use_unassigned_peptides: True algorithm|use_feature_rt: False model|type: b_spline model|linear|symmetric_regression: False model|linear|x_weight: model|linear|y_weight: model|linear|x_datum_min: 1e-15 model|linear|x_datum_max: 1000000000000000.0 model|linear|y_datum_min: 1e-15 model|linear|y_datum_max: 1000000000000000.0 model|b_spline|wavelength: 0.0 model|b_spline|num_nodes: 5 model|b_spline|extrapolate: linear model|b_spline|boundary_condition: 2 model|lowess|span: 0.666666666666667 model|lowess|num_iterations: 3 model|lowess|delta: -1.0 model|lowess|interpolation_type: cspline model|lowess|extrapolation_type: four-point-linear model|interpolated|interpolation_type: cspline model|interpolated|extrapolation_type: two-point-linear adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'trafo_out_FLAG'] |
name: value |
MapAlignerIdentification_1_input1.featureXML MapAlignerIdentification_1_input2.featureXML value |