Repository revision
0:67d2a6f3b4e3

Repository 'apoc'
hg clone https://toolshed.g2.bx.psu.edu/repos/earlhaminst/apoc

APoc tool metadata
Miscellaneous
APoc
Large-scale identification of similar protein pockets
apoc
toolshed.g2.bx.psu.edu/repos/earlhaminst/apoc/apoc/1.0
1.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/earlhaminst/apoc/apoc/1.0+galaxy1
toolshed.g2.bx.psu.edu/repos/earlhaminst/apoc/apoc/1.0 (this tool)
apoc
Requirements (dependencies defined in the <requirements> tag set)
name version type
apoc 1b16 package
Functional tests
name inputs outputs required files
Test-1 query_source|pdbfile2: apoc/3ec1A.pdb
templates_source|template_source_select: pdbfile
templates_source|pdbfile1: apoc/1ha3A.pdb
query_source|query_source_select: pdbfile
output_apoc: None
apoc/1ha3A.pdb
apoc/3ec1A.pdb
Test-2 query_source|query_source_select: pdbfile
templates_source|template_1|input: apoc/3ec1A.pdb
templates_source|template_0|input: apoc/1ha3A.pdb
query_source|pdbfile2: apoc/1yr8A.pdb
templates_source|template_source_select: list
templates_source|template_2|input: apoc/1yr8A.pdb
templates_source|lt: apoc/templ.lst
output_apoc: None
apoc/templ.lst
apoc/1ha3A.pdb
apoc/3ec1A.pdb
apoc/1yr8A.pdb
apoc/1yr8A.pdb
Test-3 query_source|query_source_select: pdbfile
templates_source|template_1|input: apoc/3ec1A.pdb
templates_source|template_0|input: apoc/1ha3A.pdb
query_source|pq: 1ha3_GDP_A_406
query_source|pdbfile2: apoc/1ha3A.pdb
templates_source|template_source_select: list
templates_source|template_2|input: apoc/1yr8A.pdb
templates_source|lt: apoc/templ.lst
output_apoc: None
apoc/templ.lst
apoc/1ha3A.pdb
apoc/3ec1A.pdb
apoc/1yr8A.pdb
apoc/1ha3A.pdb
Test-4 templates_source|template_1|input: apoc/3ec1A.pdb
templates_source|template_0|input: apoc/1ha3A.pdb
query_source|query_0|input: apoc/3ec1A.pdb
query_source|query_source_select: list
query_source|lq: apoc/query.lst
templates_source|template_source_select: list
templates_source|template_2|input: apoc/1yr8A.pdb
templates_source|lt: apoc/templ.lst
output_apoc: None
apoc/templ.lst
apoc/1ha3A.pdb
apoc/3ec1A.pdb
apoc/1yr8A.pdb
apoc/query.lst
apoc/3ec1A.pdb