| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/samtools_markdup/samtools_markdup/1.15.1+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/samtools_markdup/samtools_markdup/1.15.1+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/samtools_markdup/samtools_markdup/1.13+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/samtools_markdup/samtools_markdup/1.13 |
| toolshed.g2.bx.psu.edu/repos/iuc/samtools_markdup/samtools_markdup/1.9+galaxy3 |
| toolshed.g2.bx.psu.edu/repos/iuc/samtools_markdup/samtools_markdup/1.9+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/iuc/samtools_markdup/samtools_markdup/1.9 |
| samtools_markdup |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| samtools | 1.15.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
bamfile: 1_markdup.sam |
name: value |
1_markdup.sam value |
| Test-2 |
bamfile: 2_remove_dups.sam remove: True |
name: value |
2_remove_dups.sam value |
| Test-3 |
bamfile: 3_mark_supp_dup.bam supp: True |
name: value |
3_mark_supp_dup.bam value |
| Test-4 |
bamfile: 1_markdup.sam output_options|stats: yes |
name: value name: value |
1_markdup.sam value |
| Test-5 |
bamfile: 3_two_read_mapped.sam output_options|stats: yes |
3_two_read_mapped.sam |
|
| Test-6 |
bamfile: 1_markdup.sam existing_tags: True odist: 10 |
name: value |
1_markdup.sam value |
| Test-7 |
bamfile: 1_markdup.sam mode: s |
name: value |
1_markdup.sam value |
| Test-8 |
bamfile: 1_markdup.sam include_fails: True |
name: value |
1_markdup.sam value |
| Test-9 |
bamfile: 1_markdup.sam output_options|output_format|select_oformat: SAM |
name: value |
1_markdup.sam value |
| Test-10 |
bamfile: 10_markdup.sam output_options|output_format|ref_file: test.fa output_options|output_format|select_oformat: CRAM |
name: value |
10_markdup.sam test.fa value |