Repository revision
3:dee617b27094

Repository 'mimodd_aln'
hg clone https://toolshed.g2.bx.psu.edu/repos/wolma/mimodd_aln

MiModD Read Alignment tool metadata
Miscellaneous
maps sequence reads to a reference genome using SNAP
mimodd_align
toolshed.g2.bx.psu.edu/repos/wolma/mimodd_aln/mimodd_align/0.1.9
0.1.9
mimodd version -q
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/wolma/mimodd_aln/mimodd_align/0.1.9 (this tool)
toolshed.g2.bx.psu.edu/repos/wolma/mimodd_aln/mimodd_align/0.1.8_1
toolshed.g2.bx.psu.edu/repos/wolma/mimodd_aln/mimodd_align/0.1.8_0
mimodd_align
Requirements (dependencies defined in the <requirements> tag set)
name version type
MiModD 0.1.9 package
Functional tests
name inputs outputs required files
Test-1 datasets_0|mode_choose|input|ifile: a_part1.bam
datasets_0|mode_choose|mode: single
reference|genome: a.fa
reference|source: history
datasets_0|mode_choose|input|iformat: bam
a.fa
a_part1.bam
Test-2 datasets_0|mode_choose|input|ifile: a_part1.bam
datasets_0|mode_choose|aln_options|maxdist: 7
reference|genome: a.fa
datasets_0|mode_choose|input|iformat: bam
datasets_0|mode_choose|mode: single
reference|source: history
a.fa
a_part1.bam